Main simulation function

This function wraps up all simulation sub-functins and applies them to the intermediate sim files (created by `disnet_sim_setup`

disnet_simulate(nsims = 10, nsteps = 1000, sim_input = sim_intermed,
  sim_output_dir = getOption("disnetOutputDir", NA), parallel = FALSE,
  seed = 0)

Arguments

nsims	The number of simulations to run. Default is 10
nsteps	The number of timesteps you'd like each simulation to run for. Default = 1000. It's set to a large value so that outbreaks can run their course.
sim_input	The file setup/created by disnet_sim_setup, which has incorprated the foi, infection seeding, and/or vaccination campaign.
sim_output_dir	The directory you'd like to save the simulation results to.

Examples

f = system.file("sample_data/network", "g10.RDS", package = "SEEDNet")
g = readRDS(f)
g_comm = disnet_commuting(g)
#> [1] "working on node: 20"
#> [1] "working on node: 128"
#> [1] "working on node: 358"
#> [1] "working on node: 416"
#> [1] "working on node: 781"
#> [1] "working on node: 874"
#> [1] "working on node: 890"
#> [1] "working on node: 958"
#> [1] "working on node: 995"
nodes = igraph::vcount(g_comm)
set.seed(890)
seed_nd = igraph::vertex_attr(g_comm, "name", sample(1:nodes, 1))
for_sim = disnet_sim_setup(g_comm, seed_nd = seed_nd, output_dir = NA)
simres = disnet_simulate(sim_input = for_sim)
#> 
#> Starting simulations
#> -------------------------------------------------------
#> ******** Simulation  1 
#> 
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#> ******** Simulation  2 
#> 
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#> ******** Simulation  3 
#> 
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#> ******** Simulation  4 
#> 
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#> ******** Simulation  5 
#> 
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#> ******** Simulation  6 
#> 
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#> ******** Simulation  7 
#> 
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#> ******** Simulation  8 
#> 
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#> ******** Simulation  9 
#> 
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#> ******** Simulation  10 
#> 
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